The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Jun. 20, 2023

Filed:

Mar. 09, 2017
Applicant:

The Board of Trustees of the Leland Stanford Junior University, Stanford, CA (US);

Inventors:

Howard Y. Chang, Palo Alto, CA (US);

William J. Greenleaf, Stanford, CA (US);

Xingqi Chen, Palo Alto, CA (US);

Jason Buenrostro, Redwood City, CA (US);

Attorneys:
Primary Examiner:
Int. Cl.
CPC ...
C07K 19/00 (2006.01); C12N 9/22 (2006.01); C12Q 1/6806 (2018.01); C12N 15/90 (2006.01); C07K 1/13 (2006.01);
U.S. Cl.
CPC ...
C12N 9/22 (2013.01); C07K 1/13 (2013.01); C12N 15/90 (2013.01); C12Q 1/6806 (2013.01); C07K 2319/60 (2013.01);
Abstract

Methods for labeling and imaging the accessible genome using a transposase are disclosed. In some embodiments, a bifunctional transposase complex or transposome is used to insert adaptors comprising chemical tags selectively at accessible sites in the genome where active regulatory DNA is located. Various chemical tags can be used for labeling DNA at insertion sites, including, for example, fluorescent dyes for fluorescence imaging, metal particles for electron microscopy or magnetic manipulation of DNA, isotopic labels, or biotin or other ligands, haptens, substrates, or inhibitors that are recognized by streptavidin, antibodies, enzymes, or receptors. Labeling DNA in this manner can be used to provide spatial information regarding the positioning of regulatory DNA in the genome and makes possible the imaging and sorting of cells based on the status of their regulatory DNA.


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