The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Jun. 16, 2015

Filed:

Sep. 12, 2012
Applicants:

Timothy Yeatman, Thonotosassa, FL (US);

Barbara A. Centeno, Tampa, FL (US);

Gregory C. Bloom, Tampa, FL (US);

Inventors:

Timothy Yeatman, Thonotosassa, FL (US);

Barbara A. Centeno, Tampa, FL (US);

Gregory C. Bloom, Tampa, FL (US);

Attorneys:
Primary Examiner:
Assistant Examiner:
Int. Cl.
CPC ...
C12Q 1/68 (2006.01); G01N 33/574 (2006.01); G06F 19/20 (2011.01); G06F 19/24 (2011.01);
U.S. Cl.
CPC ...
C12Q 1/6886 (2013.01); C12Q 2600/112 (2013.01); C12Q 2600/158 (2013.01); G01N 33/574 (2013.01); G06F 19/20 (2013.01); G06F 19/24 (2013.01); G01N 33/57484 (2013.01);
Abstract

A two-tiered classification system that can be integrated with the current algorithm used by pathologists for identification of the site of origin for 'malignancy with unknown primary' is presented. In use, morphology, immunohistochemical (IHC) studies, and microarray-based top tier gene expression classifiers first subclassify cytokeratin positive carcinomas into adenocarcinoma, squamous cell carcinoma, neuroendocrine carcinoma and urothelial carcinoma. Subsequently, organ-specific IHC-markers, if available, are used in conjunction with microarray-based second tier gene expression classifiers to assign the primary site of origin to the sample. This new hybrid approach combines IHC with a hierarchy of quantitative gene expression based classifiers into an algorithmic method that can assist pathologists to further refine and support their decision making process.


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