The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Feb. 12, 2008

Filed:

Feb. 25, 2003
Applicants:

Richard D. Cramer, Sante Fe, NM (US);

Robert Jilek, St. Peters, MO (US);

Inventors:

Richard D. Cramer, Sante Fe, NM (US);

Robert Jilek, St. Peters, MO (US);

Assignee:

Tripos, L.P., San Francisco, CA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
C40B 30/02 (2006.01); G06F 19/00 (2006.01); G01N 31/00 (2006.01);
U.S. Cl.
CPC ...
Abstract

The static and electrostatic interaction energy fields between probe atoms and the atoms of a topomerically aligned fragment placed in a three-dimensional grid may be used to derive a CoMFA model. The topomeric CoMFA model coefficients may be used to predict partial activity values for fragments not derived from molecules of the activity series. The partial activities can be summed to provide a predicted activity for all fragment positions of the activity series molecules. A Virtual Library in which topomerically aligned fragments are associated with their respective steric and electrostatic interaction energies can be searched for fragments similar in shape to the fragments derived from the molecules of the activity series. The identified fragments can be used with the topomeric CoMFA coefficients to predict their activity if used in the molecular activity series.


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