The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Mar. 24, 2026

Filed:

May. 09, 2022
Applicant:

Clearnote Health, Inc., San Diego, CA (US);

Inventors:

Chin-Jen Ku, San Francisco, CA (US);

Francois Collin, San Francisco, CA (US);

Patrick Arensdorf, Palo Alto, CA (US);

Samuel Levy, San Diego, CA (US);

Assignee:

ClearNote Health, Inc., San Diego, CA (US);

Attorneys:
Primary Examiner:
Int. Cl.
CPC ...
C12Q 1/6827 (2018.01); C12Q 1/6809 (2018.01); G16B 20/20 (2019.01); G16B 40/10 (2019.01); G16H 50/30 (2018.01);
U.S. Cl.
CPC ...
C12Q 1/6827 (2013.01); C12Q 1/6809 (2013.01); G16B 20/20 (2019.02); G16B 40/10 (2019.02); G16H 50/30 (2018.01); C12Q 2537/164 (2013.01); C12Q 2600/154 (2013.01); C12Q 2600/166 (2013.01); C12Q 2600/172 (2013.01);
Abstract

A method is provided for probabilistically assigning a tissue of origin to a nucleic acid in a sample, e.g., DNA in a cell-free fluid sample obtained from a human subject. A hydroxymethylation profile is generated for the sample DNA and then compared across a reference data set of hydroxymethylation profile vectors, where each hydroxymethylation profile vector identifies the hydroxymethylation profile at a specific reference locus, the tissue-specific gene associated with the reference locus, and the tissue with which the gene and reference locus are associated. A tissue of origin can be probabilistically assigned to the sample nucleic acid using the results of the comparison. Other methods of use are also provided.


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