The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
May. 14, 2024

Filed:

Oct. 15, 2018
Applicant:

The Chinese University of Hong Kong, Shatin, HK;

Inventors:

Rossa Wai Kwun Chiu, Shatin, CN;

Kwan Chee Chan, Shatin, CN;

Yuk-Ming Dennis Lo, Homantin, CN;

Peiyong Jiang, Shatin, CN;

Kun Sun, Shatin, HK;

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
C12Q 1/6809 (2018.01); C12Q 1/689 (2018.01); G16B 20/00 (2019.01); G16B 20/10 (2019.01); G16B 20/20 (2019.01); G16B 30/10 (2019.01); G16B 30/00 (2019.01);
U.S. Cl.
CPC ...
G16B 20/20 (2019.02); C12Q 1/6809 (2013.01); C12Q 1/689 (2013.01); G16B 20/00 (2019.02); G16B 20/10 (2019.02); G16B 30/10 (2019.02); C12Q 2600/112 (2013.01); C12Q 2600/154 (2013.01); G16B 30/00 (2019.02);
Abstract

The contributions of different tissues to a DNA mixture are determined using methylation levels at particular genomic sites. Tissue-specific methylation levels of M tissue types can be used to deconvolve mixture methylation levels measured in the DNA mixture, to determine fraction contributions of each of the M tissue types. Various types of genomic sites can be chosen to have particular properties across tissue types and across individuals, so as to provide increased accuracy in determining contributions of the various tissue types. The fractional contributions can be used to detect abnormal contributions of a particular tissue, indicating a disease state for the tissue. A differential in fractional contributions for different sizes of DNA fragments can also be used to identify a diseased state of a particular tissue. A sequence imbalance for a particular chromosomal region can be detected in a particular tissue, e.g., identifying a location of a tumor.


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