The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Mar. 26, 2024

Filed:

Dec. 28, 2019
Applicant:

Intel Corporation, Santa Clara, CA (US);

Inventors:

Gurpreet Singh Kalsi, Bangalore, IN;

Anant V. Nori, Bangalore, IN;

Christopher Justin Hughes, Santa Clara, CA (US);

Sreenivas Subramoney, Bangalore, IN;

Damla Senol, Pittsburg, PA (US);

Assignee:

Intel Corporation, Santa Clara, CA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G06N 3/123 (2023.01); G06F 9/30 (2018.01); G06F 15/78 (2006.01); G06F 15/80 (2006.01); G06F 40/45 (2020.01); G16B 30/00 (2019.01); G16B 30/10 (2019.01); G06F 17/00 (2019.01);
U.S. Cl.
CPC ...
G06N 3/123 (2013.01); G06F 9/30036 (2013.01); G06F 15/78 (2013.01); G06F 15/8053 (2013.01); G06F 15/8061 (2013.01); G06F 40/45 (2020.01); G16B 30/00 (2019.02); G16B 30/10 (2019.02); G06F 17/00 (2013.01);
Abstract

A system is provided that includes a bit vector-based distance counter circuitry configured to generate one or more bit vectors encoded with information about potential matches and edits between a read and a reference genome, wherein the read comprises an encoding of a fragment of deoxyribonucleic acid (DNA) encoded via bases G, A, T, C. The system further includes a bit vector-based traceback circuitry configured to divide the reference genome into one or more windows and to use the plurality of bit vectors to generate a traceback output for each of the one or more windows, wherein the traceback output comprises a match, a substitution, an insert, a delete, or a combination thereof, between the read and the one or more windows.


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