The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Sep. 04, 2018

Filed:

Mar. 02, 2016
Applicant:

Edico Genome, Corp., La Jolla, CA (US);

Inventors:

Pieter Van Rooyen, La Jolla, CA (US);

Michael Ruehle, La Jolla, CA (US);

Robert J. Mcmillen, La Jolla, CA (US);

Mark Hahm, San Diego, CA (US);

Assignee:

EDICO GENOME, CORP., La Jolla, CA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G06G 7/50 (2006.01); G06F 19/24 (2011.01); G06N 3/00 (2006.01); G06F 19/22 (2011.01); G06F 19/28 (2011.01); H03K 19/177 (2006.01);
U.S. Cl.
CPC ...
G06F 19/24 (2013.01); G06F 19/22 (2013.01); G06F 19/28 (2013.01); G06N 3/002 (2013.01); H03K 19/17736 (2013.01);
Abstract

A system, method and apparatus for executing a sequence analysis pipeline on genetic sequence data includes an integrated circuit formed of a set of hardwired digital logic circuits that are interconnected by physical electrical interconnects. The hardwired digital logic circuits are arranged as a set of processing engines, each processing engine being formed of a subset of the hardwired digital logic circuits to perform one or more steps in the sequence analysis pipeline on the reads of genomic data. In various instances, each subset of the hardwired digital logic circuits may be formed in a wired configuration to perform one or more steps a variant call operation.


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