Case Western Reserve University

The Cleveland Clinic Foundation

Cristian Barrera

Anant Madabhushi

Vamsidhar Velcheti

Xiangxue Wang

German Corredor

Eduardo Romero

Embodiments include controlling a processor to access an image of a region of tissue demonstrating cancerous pathology; segment a cellular nucleus represented in the image; extract a first set of features from the segmented cellular nucleus; classify the segmented nucleus as a lymphocyte or non-lymphocyte based on the first set of features; for a segmented nucleus classified as a lymphocyte: computing a set of contextual features; assign the segmented nucleus classified as a lymphocyte to one of a plurality of clusters based on the set of contextual features; compute a frequency distribution of the clustered segmented nuclei classified as lymphocytes; provide the frequency distribution to a machine learning classifier; receive, from the machine learning classifier, a classification of the region of tissue as likely to experience recurrence or unlikely to experience recurrence, based, at least in part, on the frequency distribution; and display the classification.

Phenotyping tumor infiltrating lymphocytes on hematoxylin and eosin (HandE) stained tissue images to predict recurrence in lung cancer

Embodiments access a digitized image of tissue demonstrating non-small cell lung cancer (NSCLC), the tissue including a plurality of cellular nuclei; segment the plurality of cellular nuclei represented in the digitized image; extract a set of nuclear radiomic features from the plurality of segmented cellular nuclei; generate at least one nuclear cell graph (CG) based on the plurality of segmented nuclei; compute a set of CG features based on the nuclear CG; provide the set of nuclear radiomic features and the set of CG features to a machine learning classifier; receive, from the machine learning classifier, a probability that the tissue will respond to immunotherapy, based, at least in part, on the set of nuclear radiomic features and the set of CG features; generate a classification of the tissue as a responder or non-responder based on the probability; and display the classification.

Predicting response to immunotherapy using computer extracted features of cancer nuclei from hematoxylin and eosin (HandE) stained images of non-small cell lung cancer (NSCLC)

Embodiments include controlling a processor to perform operations, the operations comprising: accessing a digitized image of a region of tissue demonstrating non-small cell lung cancer (NSCLC), detecting a member of a plurality of cellular nuclei represented in the image; classifying the member of the plurality of cellular nuclei as a tumor infiltrating lymphocyte (TIL) nucleus or non-TIL nucleus; extracting spatial TIL features from the plurality of cellular nuclei, including a first subset of features based on the spatial arrangement of TIL nuclei, and a second, different subset of features based on the spatial relationship between TIL nuclei and non-TIL nuclei; generating a set of graph interplay features based on the set of spatial TIL features; providing the set of graph interplay features to a machine learning classifier; receiving, from the machine learning classifier, a probability that the region of tissue will respond to immunotherapy, based, at least in part, on the set of graph interplay features; classifying the region of tissue as likely to respond to immunotherapy or unlikely to respond to immunotherapy based, at least in part, on the probability; and displaying the classification.

Predicting response to immunotherapy using computer extracted features relating to spatial arrangement of tumor infiltrating lymphocytes in non-small cell lung cancer

Growing community of inventors

Cleveland, OH, United States of America

Cristian Barrera