National Jewish Center for Immunology and Respiratory Medicine

Alessandro Sette

Jason Greenbaum

Soren Buus

Bjoern Peters

Aaron Miller

Ezra Cohen

Howard M Grey

Stephen P Schoenberger

Systems and methods for identifying neoantigen peptide candidates are described. Such systems and methods can be used to generate engineered immune cells that target neoantigen peptides. In certain embodiments, the systems and methods do not require in silico epitope binding prediction algorithms. In certain embodiments, neoantigens are identified for a cancer or tumor with a low mutational burden.

Methods of neoantigen identification

A method of identifying potential polypeptide vaccines to an agent, such as viruses, bacteria, and parasites. A critical binding segment of a first polypeptide known to bind to a first MHC type, is ascertained. The effect of replacing each of the amino acids in the critical segment, upon binding of that segment to the first MHC type, is evaluated. Following this, a protein produced by the agent is scanned for at least one trial amino acid sequence which the foregoing evaluation indicates will be a good binder to the first MHC type. When a potentially good binding sequence is found, a polypeptide containing such sequence can be evaluated as a synthetic vaccine.

Method for identifying useful polypeptide vaccines

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San Diego, CA, United States of America

Alessandro Sette