The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Oct. 24, 2017

Filed:

Jan. 07, 2011
Applicants:

Carl A. Dowds, Sunnyvale, CA (US);

Jody C. Mcintyre, Pacifica, CA (US);

Edgar E. Erwin, Berkeley, CA (US);

Garret D. Wilson, San Francisco, CA (US);

Pragna B. Parmar, Cupertino, CA (US);

Breck S. Ohlson, Gilroy, CA (US);

Richard D. Shippy, Scottsdale, AZ (US);

Francisco J. Cifuentes, San Francisco, CA (US);

Inventors:

Carl A. Dowds, Sunnyvale, CA (US);

Jody C. McIntyre, Pacifica, CA (US);

Edgar E. Erwin, Berkeley, CA (US);

Garret D. Wilson, San Francisco, CA (US);

Pragna B. Parmar, Cupertino, CA (US);

Breck S. Ohlson, Gilroy, CA (US);

Richard D. Shippy, Scottsdale, AZ (US);

Francisco J. Cifuentes, San Francisco, CA (US);

Assignee:

Affymetrix, Inc., Santa Clara, CA (US);

Attorneys:
Primary Examiner:
Int. Cl.
CPC ...
G01N 33/53 (2006.01); G06F 19/26 (2011.01); G06F 19/18 (2011.01); G06F 19/20 (2011.01);
U.S. Cl.
CPC ...
G06F 19/26 (2013.01); G06F 19/18 (2013.01); G06F 19/20 (2013.01);
Abstract

Computer software products, methods, and systems are described which provide functionality to a user conducting experiments designed to detect and/or identify genetic sequences and other characteristics of a genetic sample, such as, for instance, gene copy number and aberrations thereof. The presently described software allows the user to interact with a graphical user interface which depicts the genetic information obtained from the experiment. The presently disclosed methods and software are related to bioinformatics and biological data analysis. Specifically, provided are methods, computer software products and systems for analyzing and visually depicting genotyping data on a screen or other visual projection. The presently disclosed methods and software allow the user conducting the experiment to differentially filter complex genetic data and information by varying genetic parameters and removing or highlighting visually various regions of genetic data of interest (CytoRegions). These differential filters may be applied by the user to the entire set of genetic data and/or only to the specific CytoRegions of interest.


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