The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Patent No.:

US 9659145 B1

PDF
Full Text
Expired
Date of Patent:
May. 23, 2017

Filed:

Jul. 30, 2013
Applicants:

Khalid Sayood, Lincoln, NE (US);

Sam Way, Boulder, CO (US);

Ozkan Ufuk Nalbantoglu, Lincoln, NE (US);

George Garrity, Okemos, MI (US);

Inventors:

Khalid Sayood, Lincoln, NE (US);

Sam Way, Boulder, CO (US);

Ozkan Ufuk Nalbantoglu, Lincoln, NE (US);

George Garrity, Okemos, MI (US);

Assignees:

NUtech Ventures, Lincoln, NE (US);

NamesforLife, LLC, Lansing, MI (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G01N 33/48 (2006.01); G06F 19/22 (2011.01); G06F 19/24 (2011.01);
U.S. Cl.
CPC ...
G06F 19/22 (2013.01); G06F 19/24 (2013.01);
Abstract

DNA sequences are analyzed using latent semantic analysis. A set of nucleotide sequences is received in which the set has a first number of sequences. A set of basis vectors is determined, in which the set has a second number of basis vectors, the second number being smaller than the first number. Each basis vector represents a specific combination of predetermined nucleotide segments. For each of the nucleotide sequences, an approximate representation of the nucleotide sequence is determined based on a combination of the basis vectors. For each pair of nucleotide sequences, a distance between the pair of nucleotide sequences is determined according the distance between the approximate representation of the pair of nucleotide sequences. The set of nucleotide sequences are classified based on the distances between the pairs of nucleotide sequences.


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