The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.
The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.
Patent No.:
Date of Patent:
Jun. 23, 2015
Filed:
Jan. 17, 2014
Applicant:
Seven Bridges Genomics Inc., Cambridge, MA (US);
Inventors:
Deniz Kural, Somerville, MA (US);
Nathan Meyvis, Somerville, MA (US);
Assignee:
Seven Bridges Genomics Inc., Cambridge, MA (US);
Attorneys:
Primary Examiner:
Int. Cl.
CPC ...
G06F 19/10 (2011.01); G06F 19/22 (2011.01); G06F 19/28 (2011.01);
U.S. Cl.
CPC ...
G06F 19/22 (2013.01); G06F 19/28 (2013.01);
Abstract
The invention generally provides systems and methods for analysis of RNA-Seq reads in which an annotated reference is represented as a directed acyclic graph (DAG) or similar data structure. Features such as exons and introns from the reference provide nodes in the DAG and those features are linked as pairs in their canonical genomic order by edges. The DAG can scale to any size and can in fact be populated in the first instance by import from an extrinsic annotated reference.