The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Nov. 07, 2006

Filed:

Dec. 03, 2001
Applicants:

Lawrence R. Toll, Redwood City, CA (US);

Patrick Denis Lincoln, Woodside, CA (US);

Peter D. Karp, San Mateo, CA (US);

Kemal Sonmez, Menlo Park, CA (US);

Inventors:

Lawrence R. Toll, Redwood City, CA (US);

Patrick Denis Lincoln, Woodside, CA (US);

Peter D. Karp, San Mateo, CA (US);

Kemal Sonmez, Menlo Park, CA (US);

Assignee:

SRI International, Menlo Park, CA (US);

Attorneys:
Primary Examiner:
Int. Cl.
CPC ...
G06F 19/00 (2006.01); G01N 33/48 (2006.01);
U.S. Cl.
CPC ...
Abstract

Disclosed are methods, software, and systems for comparing biopolymer sequences. The model includes at least two different characterizations of states of matching between segments of sequences at defined positions. Examples of states of matching include: similarity and dissimilarity between objects, as well as similarity to a reference, e.g., a reference sequence or a sequence profile. A topology of particular match states can be used to identify classes of sequences, e.g., preprohormone sequences.


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