The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Sep. 02, 2025

Filed:

Feb. 14, 2023
Applicant:

10x Genomics, Inc., Pleasanton, CA (US);

Inventor:

Dongyao Li, San Jose, CA (US);

Assignee:

10X GENOMICS, INC., Pleasanton, CA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G06T 7/00 (2017.01); G06T 3/02 (2024.01); G06T 3/20 (2006.01); G06T 7/13 (2017.01); G06T 7/168 (2017.01); G06T 7/33 (2017.01);
U.S. Cl.
CPC ...
G06T 7/0012 (2013.01); G06T 3/02 (2024.01); G06T 3/20 (2013.01); G06T 7/13 (2017.01); G06T 7/168 (2017.01); G06T 7/337 (2017.01); G06T 2207/10056 (2013.01); G06T 2207/30024 (2013.01); G06T 2207/30204 (2013.01);
Abstract

Systems and methods for spatial analysis of analytes are provided. A data structure is obtained comprising an image, as an array of pixel values, of a sample on a substrate having intersecting border regions, fiducial markers encoding N-digit codes, and a set of capture spots, where at least two border regions includes a fiducial marker. The pixel values are analyzed to identify locations of fiducial markers. The locations are aligned with locations of reference fiducial markers in a template using an alignment algorithm to obtain a final transformation between the fiducial markers in the image and the reference fiducial markers in the template. The final transformation and a coordinate system of the template are used to register the image to the set of capture spots. The registered image is then analyzed in conjunction with spatial analyte data associated with each capture spot, thereby performing spatial analysis of analytes.


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