The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.
The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.
Patent No.:
Date of Patent:
Dec. 31, 2024
Filed:
Jun. 18, 2015
Applicant:
Pacific Biosciences of California, Inc., Menlo Park, CA (US);
Inventor:
Chen-Shan Chin, Menlo Park, CA (US);
Assignee:
PACIFIC BIOSCIENCES OF CALIFORNIA, INC., Menlo Park, CA (US);
Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G16B 30/20 (2019.01); G16B 5/00 (2019.01); G16B 30/00 (2019.01);
U.S. Cl.
CPC ...
G16B 30/20 (2019.02); G16B 5/00 (2019.02); G16B 30/00 (2019.02);
Abstract
Exemplary embodiments provide methods and systems for string graph assembly of polyploid genomes. Aspects of the exemplary embodiment include receiving a string graph generated from sequence reads of at least 0.5 kb in length; identifying unitigs in the string graph and generating a unitig graph; and identifying string bundles in the unitig graph by: determining a primary contig from each of the string bundles; and determining associated contigs that contain structural variations compared to the primary contig.