The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Oct. 15, 2024

Filed:

Apr. 06, 2020
Applicants:

Agata Foryciarz, Warsaw, PL;

Dennis A. Dean, Ii, Wenham, MA (US);

Inventors:

Agata Foryciarz, Warsaw, PL;

Dennis A. Dean, II, Wenham, MA (US);

Assignee:

SEVEN BRIDGES GENOMICS, INC., Cambridge, MA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G01N 33/48 (2006.01); G16B 5/00 (2019.01); G16B 20/00 (2019.01); G16B 20/20 (2019.01); G16B 45/00 (2019.01); G16B 50/00 (2019.01); G16B 50/30 (2019.01);
U.S. Cl.
CPC ...
G16B 45/00 (2019.02); G16B 5/00 (2019.02); G16B 20/00 (2019.02); G16B 20/20 (2019.02); G16B 50/00 (2019.02); G16B 50/30 (2019.02);
Abstract

Embodiments of the invention utilize a graph-based approach for simulating genomic datasets from large scale populations. Genomic data may be represented as a directed acyclic graph (DAG) that incorporates individual sample data including variant type, position, and zygosity. A simulator may operate on the DAG to generate variant datasets based on probabilistic traversal of the DAG. This probabilistic traversal reflects genomic variant types associated with the subpopulation used to build the DAG, and as a result, the generated variant datasets maintain statistical fidelity to the original sample data.


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