The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Apr. 16, 2024

Filed:

Nov. 27, 2018
Applicant:

Grail, Inc., Menlo Park, CA (US);

Inventors:

Alexander W. Blocker, Mountain View, CA (US);

Earl Hubbell, Palo Alto, CA (US);

Oliver Claude Venn, San Francisco, CA (US);

Qinwen Liu, Fremont, CA (US);

Assignee:

GRAIL, LLC, Menlo Park, CA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G16B 20/20 (2019.01); C12Q 1/6869 (2018.01); G06F 17/10 (2006.01); G16B 5/20 (2019.01); G16B 15/00 (2019.01); G16B 30/10 (2019.01); G16B 40/00 (2019.01);
U.S. Cl.
CPC ...
G16B 20/20 (2019.02); C12Q 1/6869 (2013.01); G06F 17/10 (2013.01); G16B 5/20 (2019.02); G16B 15/00 (2019.02); G16B 30/10 (2019.02); G16B 40/00 (2019.02);
Abstract

A processing system uses a Bayesian inference based model for targeted sequencing or variant calling. In an embodiment, the processing system generates candidate variants of a cell free nucleic acid sample. The processing system determines likelihoods of true alternate frequencies for each of the candidate variants in the cell free nucleic acid sample and in a corresponding genomic nucleic acid sample. The processing system filters or scores the candidate variants by the model using at least the likelihoods of true alternate frequencies. The processing system outputs the filtered candidate variants, which may be used to generate features for a predictive cancer or disease model.


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