The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Sep. 19, 2023

Filed:

May. 19, 2020
Applicant:

Omnibiocomputing Llc, Santa Clara, CA (US);

Inventors:

Chen-Shan Chin, San Leandro, CA (US);

Wangchang Hou, San Jose, CA (US);

Asif Khalak, Belmont, CA (US);

Assignee:

OmniBioComputing LLC, Santa Clara, CA (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
C12N 15/10 (2006.01); C12Q 1/6874 (2018.01);
U.S. Cl.
CPC ...
C12N 15/1027 (2013.01); C12Q 1/6874 (2013.01);
Abstract

Methods, systems, and devices are contemplated for assembling a genome from duplicate segments of the genome. Sequences with a first level of common neighboring base pairs are identified and organized into first level groups. Groups are then identified from the first level groups that have a second level of common neighboring base pairs and organized into a number of second level groups. A third level of groups can further be organized in some embodiments. Typically the second level groups are assembled into spans having contiguous base pair sequences, which are then assembled into the broader genome sequence. The inventive subject matter is preferably used for whole genome sequencing.


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