The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Jul. 18, 2023

Filed:

Oct. 23, 2018
Applicants:

The Broad Institute, Inc., Cambridge, MA (US);

Massachusetts Institute of Technology, Cambridge, MA (US);

Inventors:

Paul Blainey, Cambridge, MA (US);

Navpreet Ranu, Cambridge, MA (US);

Todd Gierahn, Cambridge, MA (US);

J. Christopher Love, Cambridge, MA (US);

Assignees:

The Broad Institute, Inc., Cambridge, MA (US);

Massachusetts Institute of Technology, Cambridge, MA (US);

Attorneys:
Primary Examiner:
Int. Cl.
CPC ...
C12N 15/10 (2006.01); C12Q 1/6806 (2018.01); C12Q 1/6869 (2018.01); C40B 30/04 (2006.01); C40B 50/06 (2006.01); C12N 1/20 (2006.01); C40B 40/06 (2006.01); C40B 40/10 (2006.01); C12R 1/465 (2006.01);
U.S. Cl.
CPC ...
C12N 15/1006 (2013.01); C12N 1/205 (2021.05); C12Q 1/6806 (2013.01); C12Q 1/6869 (2013.01); C40B 30/04 (2013.01); C40B 40/06 (2013.01); C40B 40/10 (2013.01); C40B 50/06 (2013.01); C12N 2310/20 (2017.05); C12R 2001/465 (2021.05); C12Y 301/11 (2013.01); C12Y 302/02027 (2013.01);
Abstract

The present invention relates to the analysis of complex single cell sequencing libraries. Disclosed are methods for enrichment of library members based on the presence of cell-of origin barcodes to identify and concentrate DNA that is relevant to interesting cells or components that would be expensive or difficult to study otherwise. Also, disclosed are methods of capturing cDNA library molecules by use of CRISPR systems, hybridization or PCR. The present invention allows for identifying the properties of rare cells in single cell RNA-seq data and accurately profile them through clustering approaches. Further information on transcript abundances from subpopulations of single cells can be analyzed at a lower sequencing effort. The methods also allow for linking TCR alpha and beta chains at the single cell level.


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