The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
May. 31, 2022

Filed:

Oct. 16, 2015
Applicant:

Seven Bridges Genomics Inc., Cambridge, MA (US);

Inventor:

Vladimir Semenyuk, Pacific Grove, CA (US);

Assignee:

Seven Bridges Genomics Inc., Charlestown, MA (US);

Attorney:
Primary Examiner:
Assistant Examiner:
Int. Cl.
CPC ...
G06F 16/22 (2019.01); G06F 16/901 (2019.01); G06F 16/2455 (2019.01); G16B 50/00 (2019.01); G16B 50/20 (2019.01); G16B 30/10 (2019.01); G16B 50/30 (2019.01); G16B 50/10 (2019.01); G16B 50/50 (2019.01); G16B 30/00 (2019.01);
U.S. Cl.
CPC ...
G06F 16/2219 (2019.01); G06F 16/24568 (2019.01); G06F 16/9024 (2019.01); G16B 30/10 (2019.02); G16B 50/00 (2019.02); G16B 50/10 (2019.02); G16B 50/20 (2019.02); G16B 50/30 (2019.02); G16B 50/50 (2019.02); G16B 30/00 (2019.02);
Abstract

Methods of the invention include representing biological data in a memory subsystem within a computer system with a data structure that is particular to a location in the memory subsystem and serializing the data structure into a stream of bytes that can be deserialized into a clone of the data structure. In a preferred genomic embodiment, the biological data comprises genomic sequences and the data structure comprises a genomic directed acyclic graph (DAG) in which objects have adjacency lists of pointers that indicate the location of any object adjacent to that object. After serialization and deserialization, the clone genomic DAG has the same structure as the original to represent the same sequences and relationships among them as the original.


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