The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Feb. 09, 2021

Filed:

Feb. 01, 2017
Applicant:

The Board of Regents of the University of Nebraska, Lincoln, NE (US);

Inventors:

Sally A. Mackenzie, Lincoln, NE (US);

Robersy Sanchez, Lincoln, NE (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
C12Q 1/6895 (2018.01); G16B 20/00 (2019.01); G16B 30/00 (2019.01); G16B 50/20 (2019.01); G16B 20/20 (2019.01); G16B 40/00 (2019.01); G16H 50/20 (2018.01);
U.S. Cl.
CPC ...
C12Q 1/6895 (2013.01); G16B 20/00 (2019.02); G16B 20/20 (2019.02); G16B 30/00 (2019.02); G16H 50/20 (2018.01); C12Q 2600/13 (2013.01); C12Q 2600/154 (2013.01); G16B 40/00 (2019.02); Y02A 90/10 (2018.01);
Abstract

A computer-implemented method of preparing a set of differentially informative methylated positions (DIMPs) or differentially informative methylated regions (DIMRs) from a sample methylome of an animal or plant having a phenotypic characteristic different from a wild-type of the same species of animal or plant, and the characteristic is associate with differences in methylation of the genome, comprises: providing a computer with the sample methylome, and a reference methylome of the wild-type of the same species of animal or plant; calculating with the computer a divergence between a plurality of cytosine positions of the sample methylome and the reference methylome; and selecting with the computer a set of DIMPs or DIMRs. Each DIMP or DIMR is selected based on an approximation of the energy required to produce the divergence between methylation levels of the plurality of cytosine positions of the sample methylome as compared to the wild-type methylome.


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