The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Sep. 29, 2020

Filed:

Jul. 13, 2017
Applicant:

Psomagen, Inc., Rockville, MD (US);

Inventors:

Zachary Apte, San Francisco, CA (US);

Jessica Richman, San Francisco, CA (US);

Daniel Almonacid, San Francisco, CA (US);

Inti Pedroso, San Francisco, CA (US);

Juan Ugalde, San Francisco, CA (US);

Rodrigo Ortiz, San Francisco, CA (US);

Assignee:

PSOMAGEN, INC., Rockville, MD (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
G01N 33/48 (2006.01); G06F 19/00 (2018.01); G16B 50/00 (2019.01); C12Q 1/6883 (2018.01); C12Q 1/689 (2018.01); G16H 40/63 (2018.01); G16H 40/67 (2018.01); G16H 50/50 (2018.01); G16H 50/20 (2018.01); G16H 10/40 (2018.01); G16H 20/40 (2018.01); G16H 20/10 (2018.01); G16B 20/00 (2019.01); G16B 50/30 (2019.01); G06G 7/58 (2006.01); G16B 40/20 (2019.01); G16B 50/20 (2019.01); G16B 30/10 (2019.01);
U.S. Cl.
CPC ...
G06F 19/3418 (2013.01); C12Q 1/689 (2013.01); C12Q 1/6883 (2013.01); G06F 19/30 (2013.01); G16B 20/00 (2019.02); G16B 50/00 (2019.02); G16B 50/30 (2019.02); G16H 10/40 (2018.01); G16H 20/10 (2018.01); G16H 20/40 (2018.01); G16H 40/63 (2018.01); G16H 40/67 (2018.01); G16H 50/20 (2018.01); G16H 50/50 (2018.01); C12Q 2600/106 (2013.01); C12Q 2600/118 (2013.01); C12Q 2600/156 (2013.01); G16B 30/10 (2019.02); G16B 40/20 (2019.02); G16B 50/20 (2019.02);
Abstract

Embodiments of a method and system for microbial pharmacogenomics can include: a sample handling system operable to collect containers including biological samples from a set of users, the handling system including a sequencing system operable to determine microorganism sequences from the biological samples; a microbiome characterization system operable to: determine microbiome pharmacogenomics data based on the microorganism sequences, collect supplementary data associated with the antibiotics-associated condition for the set of users, and transform the supplementary data and features extracted from the microbiome pharmacogenomics data into a characterization model associated with the antibiotics-associated condition; and a treatment system operable to promote a treatment to the user for the antibiotics-associated condition based on characterizing user biological material with the characterization model in relation to the antibiotics-associated condition.


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