The patent badge is an abbreviated version of the USPTO patent document. The patent badge does contain a link to the full patent document.

The patent badge is an abbreviated version of the USPTO patent document. The patent badge covers the following: Patent number, Date patent was issued, Date patent was filed, Title of the patent, Applicant, Inventor, Assignee, Attorney firm, Primary examiner, Assistant examiner, CPCs, and Abstract. The patent badge does contain a link to the full patent document (in Adobe Acrobat format, aka pdf). To download or print any patent click here.

Date of Patent:
Dec. 24, 2019

Filed:

Oct. 11, 2018
Applicants:

Michael Edward Hogan, Stony Brook, NY (US);

Melissa Rose May, Tucson, AZ (US);

Frederick Henry Eggers, Sahuarita, AZ (US);

Inventors:

Michael Edward Hogan, Stony Brook, NY (US);

Melissa Rose May, Tucson, AZ (US);

Frederick Henry Eggers, Sahuarita, AZ (US);

Assignee:

PathogenDX Inc, Scottsdale, AZ (US);

Attorney:
Primary Examiner:
Int. Cl.
CPC ...
C12Q 1/6895 (2018.01); C12Q 1/689 (2018.01); C12Q 1/686 (2018.01); C12Q 1/6837 (2018.01); C12Q 1/6893 (2018.01); C12Q 1/6874 (2018.01); C12Q 1/6844 (2018.01); C12Q 1/682 (2018.01); C12Q 1/6853 (2018.01); G16B 30/00 (2019.01); G16B 25/10 (2019.01); G16B 20/00 (2019.01);
U.S. Cl.
CPC ...
C12Q 1/6895 (2013.01); C12Q 1/682 (2013.01); C12Q 1/686 (2013.01); C12Q 1/689 (2013.01); C12Q 1/6837 (2013.01); C12Q 1/6846 (2013.01); C12Q 1/6853 (2013.01); C12Q 1/6874 (2013.01); C12Q 1/6893 (2013.01); G16B 20/00 (2019.02); G16B 25/10 (2019.02); G16B 30/00 (2019.02);
Abstract

Provided herein is an internal standard method for determining copy number of a pathogen DNA in an unpurified nucleic acid sample by using a known copy number of synthetic DNA that shares a consensus region sequence with the pathogen. The sample is subject to two amplification steps using locus-specific primers and fluorescent primers respectively to obtain fluorescent amplicons for the pathogen and synthetic DNA. These are hybridized with immobilized pathogen-specific and synthetic DNA-specific nucleic acid probes and imaged to obtain fluorescent signals for pathogen-specific and synthetic DNA-specific amplicons. Signal intensities are correlated with the known copy number of synthetic DNA to determine copy number of pathogen DNA in the plant. Also described herein is a method to simultaneously quantitate using the above method, copy numbers of both pathogen and plant DNA in a sample.


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