Mds Inc.

Applied Biosystems, LLC

Applera Corporation

Mds Inc., Doing Business as Mds Sciex

Yves LeBlanc

Nic G Bloomfield

Nic Bloomfield

Systems and methods for analyzing compounds in a sample. In one embodiment, a mass spectrometer includes an ion source for emitting a plurality of ions from a sample together with a detector positioned downstream of said ion source and configured to detect the impact of emitted ions on the detector. The mass spectrometer also includes a controller operatively coupled to the detector and to the ion source and configured to calculate the m/z for each detected ion. The controller comprises a mass defect filter configured to determine if the m/z for each detected ion falls within a pre-determined mass defect range. The mass spectrometer also includes data storage coupled to the controller, wherein the data storage is configured to store detected ion m/z data corresponding to the m/z for a detected ion if the m/z falls within the mass defect range. The mass spectrometer may also include an ion mass filter positioned downstream of the ion source and operatively coupled to the controller. The ion mass filter is configured to selectively filter for ions substantially corresponding to the stored detected ion m/z data. The spectrometer may also include a fragmentor operatively coupled to the ion mass filter, wherein the fragmentor is configured to fragment each selected ion and to emit each fragment towards the detector. The controller is operatively coupled to the fragmentor and configured to calculated the m/z for each fragment detected by the detector. The data storage is preferably further configured to store fragment m/z data corresponding to the m/z for each detected fragment.

Mass defect triggered information dependent acquisition

A first mass spectrum and a second mass spectrum of the same ion sample can be analyzed to determine reaction pairs. These reaction pairs are determined based on a selected neutral difference by shifting the second mass spectrum by the neutral difference relative to the first mass spectrum to provide a shifted mass spectrum. Then, the shifted mass spectrum is compared with the first mass spectrum of the ion sample to determine the reaction pairs based on the neutral difference.

Method, system and computer software product for specific identification of reaction pairs associated by specific neutral differences

In the field of mass spectrometry, a method of obtaining a mass spectrum enriched with fragment ions while retaining the precursor ion. The technique includes varying the collision energy experienced by the precursor ion such that a range of fragmentations occur. Related methods are also disclosed for obtaining MS, MS, MSand MSspectra which are enriched with fragment ions.

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Toronto, Canada

Yves LeBlanc