New England Biolabs, Inc.

Vishnu Udayakumaran Nair Sunitha Kumary

Shuang-Yong Xu

Sriharsa Pradhan

George R Feehery

Pierre O Esteve

Hang Gyeong Chin

Julie Beaulieu

Compositions, methods and kits are provided for identifying the presence and location of a target in chromosomal DNA. A nicking endonuclease fused to a binding domain that binds to a constant region of an antibody (NEFP) is provided that may be used for binding to a target directly or via an antibody that binds to the target. The target may be a protein or structural feature of the DNA and its presence and location may correspond to a phenotype and/or pathology in a biopsy or other cell sample for diagnostic purposes. The background is reduced by the addition of a glycoaminoglycan (GAG) that reversibly inhibits binding of the NEFP to DNA. Nick translation in the presence of a strand displacing polymerase enables the incorporation of tagged nucleotides that (i) blocks re-nicking; (ii) facilitates immobilization of DNA fragments around the target for sequencing; and/or (iii) enables dye labelling of the chromosomal DNA within the cell nuclei for analysis by microscopy.

Growing community of inventors

Ipswich, MA, United States of America

Vishnu Udayakumaran Nair Sunitha Kumary