Travera, Inc.

Massachusetts Institute of Technology

Selim Olcum

Mark L Stevens

Scott R Manalis

Robert J Kimmerling

Rob Kimmerling

Nathan Cermak

Steven Charles Wasserman

Clifford Reid

Anthony Minnah

Nicholas L Calistri

Francisco Feijó Delgado

Madeleine Vacha

Joon Ho Kang

In silico tools are used to determine possibly effective therapies for treating a patient's cancer based on patient, drug, and cancer information. Functional assays can be performed on living cancer cells from the patient to evaluate the possibly effective therapies along with subsequent genomic or other more destructive assays to provide additional information from a single sample. Drug, patient, cancer, and outcome information can be recorded and updated iteratively and analyzed using machine learning to identify correlations between various patient, cancer, and drug characteristics and expected outcomes and drug efficacies.

Identifying cancer therapies

The invention provides devices and methods for linked multimodal measurements of individual particles using a mass sensor and an additional sensor.

Cellular measurement, calibration, and classification

The present invention includes methods and systems for assessing a cellular response to a treatment modality, such as potential drug candidate, by comparing normalized single-cell measurements of cellular properties without the need of a calibration step.

Treatment response assessment using normalized single cell measurements

Systems and methods for measuring the properties (e.g., mechanical properties) of particles such as biological entities, in a fluidic channel(s) are generally provided. In some embodiments, the systems and methods comprise measuring an acoustic scattering of single particles. For example, a single particle (e.g., a biological entity) may be flowed in a suspended fluidic channel (e.g., a suspended microfluidic channel) and the fluidic channel is oscillated at or near a (mechanical) resonant frequency (e.g., at a second or higher bending mode) of the suspended fluidic channel. In some cases, an acoustic scattering signal (e.g., the change in resonant frequency of the fluidic channel as the particle flows along a longitudinal axis of the channel) may correspond to a property (e.g., a mechanical property, a cross-linking density, a transport rate of small molecules into/out of the particle) of the particle. In certain embodiments, the systems and methods comprise determining a node deviation due to a single particle (or node deviations for a plurality of particles).

Systems and methods for measuring properties of particles

Methods of calibration are provided. A method comprises introducing a material with cell-like properties and a known mass into a sensor on a measurement instrument to generate a calibration reading and adjusting an output module of the measurement instrument until the measurement instrument calibrates to the known mass for the material.

Calibration of a functional biomarker instrument

Systems and methods for flowing particles, such as biological entities, in a fluidic channel(s) are generally provided. In some cases, the systems described herein are designed such that a single particle may be isolated from a plurality of particles and flowed into a fluidic channel (e.g., a microfluidic channel) and/or collected e.g., on fluidically isolated surfaces. For example, the single particle may be present in a plurality of particles of relatively high density and the single particle is flowed into a fluidic channel, such that it is separated from the plurality of particles. The particles may be spaced within a fluidic channel so that individual particles may be measured/observed over time. In certain embodiments, the particle may be a biological entity. Such article and methods may be useful, for example, for isolating single cells into individual wells of multi-well cell culture dishes (e.g., for single-cell analysis).

Systems, articles, and methods for flowing particles

Systems and Methods for controlling one or more mechanical resonators and determining information from resonant shift of the resonator(s) behavior, including at least one mechanical resonator, an excitation element for driving the resonator(s), a sensor for monitoring the motion of the resonator(s), at least one phase locked loop (PLL) in feedback between the excitation and monitoring elements, wherein each PLL is configured to operate at or near a different resonant mode of the resonator(s), and a processor for determining information from PLL internal signals indicative of a resonator frequency shift.

Simultaneous oscillation and frequency tracking of multiple resonances via digitally implemented phase-locked loop array

Serial suspended microchannel resonator sensor array. The array includes a plurality of resonator cantilevers in fluid communication with one another and a plurality of delay channels in fluid communication with, and disposed between, the resonator cantilevers. An object introduced into the array will flow in one direction and be measured by each of the cantilevers in turn after a selected delay in the delay channels.

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Cambridge, MA, United States of America

Selim Olcum