Affymetrix, Inc.

Cavium Networks, Inc.

Oavium Networks, Inc.

Philip H Dickinson

Muhammad Raghib Hussain

Imran Badr

Richard Eugene Kessler

Heather Koshinsky

Adam McCoy

John D Curry

Daniel Fitzpatrick

Robert O'Callahan

Anthony C Schweitzer

Gregg Alan Bouchard

Michael S Bertone

Thomas Frederick Hummel

Robert A Sanzone

Faisal Masood

Daniel A Katz

Disclosed are compositions, methods and kits for determining the presence, absence, amount, copy number, or other characteristics of one or more polynucleotide sequences in two or more samples and use thereof in genotyping, evaluation of copy number variation, expression analysis, determination of splice variants and fusion genes, and other genetic analyses.

Nucleic acid analysis by joining barcoded polynucleotide probes

Methods, compositions and kits are disclosed for assays to determine the binding affinity of DNA-binding proteins or RNA-binding proteins for their corresponding recognition site(s). In particular, assays are disclosed for measuring binding affinities when either the binding protein, or the recognition sequence of the recognition site, or cofactor proteins, contain one or more mutations. The disclosed assays can thus be utilized to measure the effect on transcription factor binding caused by mutations within the recognition site, or mutations within the binding domain of the protein, and to provide binding affinity information that can be correlated with altered gene regulation and expression. The disclosed assays can be personalized to a specific person or organism, with the measured binding affinities based upon an individual's specific binding proteins and recognition sites. Furthermore, embodiments are capable of measuring binding affinities between multiple binding proteins and multiple recognition sites through an entirely in vitro process.

Assays for affinity profiling of nucleic acid binding proteins

An apparatus is described comprising: a plurality of security processing resources for processing two or more different types of data traffic within a cryptographic processor; a first scheduler to provide a first type of data traffic to a first predefined subset of the security processing resources using a first scheduling technique; and a second scheduler to provide a second type of data traffic to a second predefined subset of the security processing resources using a second scheduling technique.

Apparatus and method for allocating resources within a security processing architecture using multiple queuing mechanisms

Apparatus and method for allocating resources within a security processing architecture using multiple groups

A network transport layer accelerator accelerates processing of packets so that packets can be forwarded at wire-speed. To accelerate processing of packets, the accelerator performs pre-processing on a network transport layer header encapsulated in a packet for a connection and performs in-line network transport layer checksum insertion prior to transmitting a packet. A timer unit in the accelerator schedules processing of the received packets. The accelerator also includes a free pool allocator which manages buffers for storing the received packets and a packet order unit which synchronizes processing of received packets for a same connection.

TCP engine

A security processing apparatus is described comprising: a cryptographic processor having a first plurality of security processing resources initially allocated to process a first type of data traffic and a second plurality of security processing resources initially allocated to process a second type of data traffic; a monitor module to monitor load on the first plurality of security processing resources and the second plurality of security processing resources as the first and second types of data traffic are processed; a resource allocation module to reallocate some of the first plurality of security processing resources from the first type of data traffic to the second type of data traffic if detected load on the second plurality of security processing resources is above a specified threshold value.

Apparatus and method for allocating resources within a security processor

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Cupertino, CA, United States of America

Philip H Dickinson