Syngenta Participations Ag

Min Li

Joseph Richard Byrum

Venkata Krishna Kishore

Daolong Wang

Zhigang Guo

Joseph Dallas Clarke

Libardo Andres Gutierrez Rojas

Joseph Dallas V Clarke

Provided herein are methods for evaluating associations between candidate genes and a trait of interest in a population. The methods include a combination of genome-wide association analysis and one or more of nested association mapping (NAM), expression QTL analysis (eQTL), and allele epistastic analysis (AEA). Markers are selected or prioritized if they are shown to be positively-correlated with a trait of interest using GWA and a combination of one or both of NAM and eQTL. Also provided are models for evaluating the association between a candidate marker and a trait in a nested population of organisms. These methods include single marker regression and multiple marker regression models. Markers identified using the methods of the invention can be used in marker assisted breeding and selection, as genetic markers for constructing linkage maps, for gene discovery, for identifying genes contributing to a trait of interest, and for generating transgenic organisms having a desired trait.

Method for selecting statistically validated candidate genes

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Champaign, IL, United States of America

Min Li