Chung Yuan Christian University

Riken Corporation

Kuniya Abe

Hideo Yokota

Ming-Dar Tsai

Yuan-Hsiang Chang

Slo-Li Chu

Disclosed herein are a system for identifying cells on a microscopic image. According to some embodiments, the system comprises a non-transitory processor-readable medium, and a processor communicably configured to receive the microscopic image, and process the received microscopic image with a convolutional neural network (CNN) model having a modified U-Net architecture. Also disclosed herein are methods for identifying a spatial pattern of human induced pluripotent stem cells (hiPSCs) by using the present system.

Systems for identifying cells and uses thereof

Disclosed herein are methods for predicting the reprogramming process of cells from a microscopic image of one or more cells. According to some embodiments, the method includes capturing an image of region of interest (ROI) of every pixel of the microscopic image, followed by processing the ROI image with a trained convolutional neural network (CNN) model and a trained long short-term memory (LSTM) network so as to obtain predicted probability maps. Also disclosed herein are a storage medium and a system for executing the present methods.

Method and apparatus for predicting cell reprogramming

Disclosed herein are methods for identifying cells undergoing reprogramming and reprogrammed cells from a fluorescence microscopic image of one or more cells. According to some embodiments, the method includes an image processing step, a cell detection step, and, optionally, a clustering step.

Method and apparatus for detecting cell reprogramming

Disclosed herein are methods for analyzing cell kinematics in a nucleated cell culture from a time-series sequence of multiple fluorescence microscopic images of the nucleated cell culture. The method includes the steps of, (a) identifying every cell nucleus in each fluorescence microscopic image; (b) identifying every cell cluster using the cell nuclei identified in the step (a); and (c) tracking the cells and/or cell clusters using the cell nuclei and cell clusters identified for the fluorescence microscopic images in steps (a) and (b) respectively.

Growing community of inventors

Ibaraki, Japan

Kuniya Abe