International Business Machines Corporation

Kun Hu

James Harvey Kaufman

Stefan Bengt Edlund

Mark Kunitomi

Matthew Aaron Davis

An iterative process for optimizing one or more parameters used by a k-mer based de novo genome assembler program to assemble a set of sequenced nucleic acids is described. The method utilizes quality metrics whose desired values are initially specified. Computed values of the quality metrics are calculated during the assembly process and compared to the desired values. The assembly process stops when the computed values are not desired values. After modification of one or more of the parameters (e.g., k-mer value), the assembly process re-initiates using the modified parameter set. This process repeats until the computed values of the quality metrics meet the desired values. The final parameter set is then used to generate or complete one or more final assembled genomes.

Methods of optimizing genome assembly parameters

Embodiments relate to implementing a query-driven virtual social media network group. An aspect includes providing, through a social media network, a search function option incorporated into a user interface that is configured for access by a user of the social media network. Another aspect includes receiving, at the social media network, a query from the user through the search function option of the user interface and searching a database of user profiles and content history for information that satisfies the query. The user profiles and the content history include content received from users as members of the social media network. A further aspect includes creating a virtual social media network group from results of the searching and providing access to a view of the virtual social media network group via the user interface for the user.

Query-driven virtual social network group

Embodiments relate to method and program product enabling collaborative social coding. Social networking functionality is embedded and via that social networking functionality information relating to a particular function across a computing network is tracked. The tracked information is then accumulating and organized as relating to a particular function. Upon request receipt, information is then provided relating to the particular function including a list of those accessing that function.

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Kun Hu