Leland Stanford Junior University

The United States Government As Represented by the Department of Veterans Affairs

University of California

Arizona State University

Joseph Chihping Liao

Yang Li

David A Haake

Junseok Chae

Bernard M Churchill

Marc A Suchard

Dimitar V Zlatev

Audrey K Bowden

Mitra Mastali

Roland Angst

Kristen L Lurie

Jennie Appel

Methods and systems for three-dimensional (3D) reconstruction of endoscopic data in accordance with embodiments of the invention are described. In one embodiment, a method for processing a plurality of images captured by an endoscope includes preprocessing a plurality of images captured by an endoscope and including at least a portion of an organ. In many embodiments of the invention, the preprocessing includes estimating variations in light intensity within scenes captured by the plurality of images, and generating a set of color-adjusted images based on those variations. The method according to some embodiments of the invention may include generating a 3D point cloud representing points on a surface of the organ based on the set of color-adjusted images, defining a mesh representing the surface of the organ based on the 3D point cloud, and generating a texture of the surface of the organ based on the set of color-adjusted images.

3D reconstruction and registration of endoscopic data

Systems and methods for performing cancer screening assays are disclosed. The disclosed systems and methods use a thin film comprising cross-linked polysiloxane. At least a portion of a biological sample to be assayed is contacted with the thin film, along with a cell culture media. After a subsequent incubation period, the thin film is visualized to detect a wrinkle pattern (or lack thereof). The presence of one or more wrinkles and/or a higher degree of wrinkling in the thin film indicates the presence of cancer cells in the biological sample. The disclosed systems and methods can be incorporated into improved assays and kits for cancer screening.

Method of screening cancer cells using wrinkle patterns on a thin membrane

Described are probes and methods for detecting pathogens and antibiotic resistance of a specimen. The method comprises contacting the specimen with a growth medium; and lysing the specimen to release nucleic acid molecules from the specimen. The lysate of the specimen is contacted with a capture probe immobilized on a substrate, wherein the capture probe comprises an oligonucleotide that specifically hybridizes with a first target nucleic acid sequence region of ribosomal RNA. The lysate is in contact with a detector probe that comprises a detectably labeled oligonucleotide that specifically hybridizes with a second target nucleic acid sequence region of ribosomal RNA. The presence or absence of labeled oligonucleotide complexed with the substrate is determined. Detection of labeled oligonucleotide complexed with the substrate is indicative of the presence of pathogen. Performing the method in the presence and absence of an antibiotic permits detection of antibiotic resistance.

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Growing community of inventors

Stanford, CA, United States of America

Joseph Chihping Liao