International Business Machines Corporation

Gopalkrishna Veni

Tanveer Fathima Syeda-Mahmood

Mehdi Moradi

Hongzhi Wang

Rui Zhang

Deepika Kakrania

Ahmed El Harouni

Prasanth Prasanna

Hui Tang

Image segmentation based on the combination of a deep learning network and a shape-guided deformable model is provided. In various embodiments, a time sequence of images is received. The sequence of images is provided to a convolutional network to obtain a sequence of preliminary segmentations. The sequence of preliminary segmentations labels a region of interest in each of the images of the sequence. A reference and auxiliary mask are generated from the sequence of preliminary segmentations. The reference mask corresponds to the region of interest. The auxiliary mask corresponds to areas outside the region of interest. A final segmentation corresponding to the region of interest is generated for each of the sequence of images by applying a deformable model to the composite mask with reference to the auxiliary mask.

Image segmentation based on a shape-guided deformable model driven by a fully convolutional network prior

A mechanism is provided in a data processing system comprising a processor and a memory, the memory comprising instructions executed by the processor to specifically configure the processor to implement a multi-atlas segmentation engine. An offline registration component performs registration of a plurality of atlases with a set of image templates to thereby generate and store, in a first registration storage device, a plurality of offline registrations. The atlases are annotated training medical images and the image templates are non-annotated medical images. The multi-atlas segmentation engine receives a target image. An image selection component selects a subset of image templates in the set of image templates based on the target image. An online registration component performs registration of the subset of image templates with the target image to generate a plurality of online registrations. The multi-atlas segmentation engine retrieves offline registrations corresponding to the subset of image templates from the first registration storage device. The multi-atlas segmentation engine performs segmentation of the target image based on the retrieved offline registrations corresponding to the subset of image templates and the plurality of online registrations. The segmentation applies labels to anatomical structures present in the target image based on the retrieved offline registrations and the plurality of online registrations to thereby output a modified target image.

Template based anatomical segmentation of medical images

A method comprises (a) collecting (i) a set of chest computed tomography angiography (CTA) images scanned in the axial view and (ii) a manual segmentation of the images, for each one of multiple organs; (b) preprocessing the images such that they share the same field of view (FOV); (c) using both the images and their manual segmentation to train a supervised deep learning segmentation network, wherein loss is determined from a multi-dice score that is the summation of the dice scores for all the multiple organs, each dice score being computed as the similarity between the manual segmentation and the output of the network for one of the organs; (d) testing a given (input) pre-processed image on the trained network, thereby obtaining segmented output of the given image; and (e) smoothing the segmented output of the given image.

System for segmentation of anatomical structures in cardiac CTA using fully convolutional neural networks

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San Jose, CA, United States of America

Gopalkrishna Veni