Edico Genome Corporation

Illumina Corporation

Gavin Stone

Pieter Van Rooyen

Eric Jon Ojard

Michael D Ruehle

Mark Hahm

Rami Mehio

Amnon Ptashek

Lucian Iancovici

A system, method and apparatus for executing a bioinformatics analysis on genetic sequence data is provided. Particularly, a genomics analysis platform for executing a sequence analysis pipeline is provided. The genomics analysis platform includes one or more of a first integrated circuit, where each first integrated circuit forms a central processing unit (CPU) that is responsive to one or more software algorithms that are configured to instruct the CPU to perform a first set of genomic processing steps of the sequence analysis pipeline. Additionally, a second integrated circuit is also provided, where each second integrated circuit forming a field programmable gate array (FPGA), the FPGA being configured by firmware to arrange a set of hardwired digital logic circuits that are interconnected by a plurality of physical interconnects to perform a second set of genomic processing steps of the sequence analysis pipeline, the set of hardwired digital logic circuits of each FPGA being arranged as a set of processing engines to perform the second set of genomic processing steps. A shared memory is also provided.

Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing

Bioinformatics systems, apparatuses, and methods for generating a De Brujin graph

Bioinformatics systems, apparatuses, and methods for generating a De Bruijn graph

A method and system for correlating genome data with EMR/PHR data is disclosed herein. The method includes identifying a plurality of sources of genome data. The method also includes generating an index file for each of the plurality of genome files. The method also includes transmitting each index file to a central depository. The method also includes identifying electronic medical record (EMR) and/or personal health record (PHR) data at each source of the plurality of sources of genome data. The method also includes correlating each genome file of the plurality of genome files with a corresponding EMR/PHR data.

Method and system for genomic visualization

Growing community of inventors

San Diego, CA, United States of America

Gavin Stone