Genomic Health, Inc.

Gene Logic, Inc.

Prognomiq, Inc.

Clearnote Health, Inc.

Francois Collin

Joffre B Baker

Maureen T Cronin

John E Blume

Patrick A Arensdorf

Mei-Lan Liu

Wayne Cowens

Robert S Langer, Jr

Michael R Crager

Philip Ma

Bruce Wilcox

Kunbin Qu

Carl L Millward

Mi Yang

Chinmay Belthangady

John Morlan

Robert J Pelham

Manway Liu

Thodoros Topaloglou

Dominick V Sinicropi

Manoj Khadka

Ehdieh Khaledian

Kevin McLoughlin

Victor M Markowitz

Alexandros Athanasopoulos

Chin-Jen Ku

Samuel Levy

James C Stephans

Described herein are methods such as multi-omic methods for assessing a disease such as cancer. The multi-omic methods may integrate proteomic, transcriptomic, genomic, lipidomic, or metabolomic data. The method screening diseases or disease states. Also described herein are methods for screening for diseases or disease states from biological samples. The methods may include assessing whether a nodule, mass, or cyst is cancerous.

Multi-omic assessment using proteins and nucleic acids

The present disclosure provides methods for assessing a patient's cancer risk and/or recurrence risk, which methods comprise assaying, in a biological sample obtained from the gastrointestinal (GI) tract of the patient, an expression level of a risk gene. The present disclosure also provides methods involving a cancer risk/recurrence risk sequence, i.e. the V600E mutation of the BRAF gene, which is useful for assessing cancer risk and/or recurrence risk in a patient.

Methods of predicting cancer risk using gene expression in premalignant tissue

The present invention provides systems and methods for analyzing gene expression, gene annotation, and sample information in a relational format supporting efficient exploration and analysis, including comparative differential expression analysis, expression pattern matching, and mapping of external attributes or identifiers to internal representations of gene fragments or samples.

Methods and systems for efficient comparison, identification, processing, and importing of gene expression data

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Berkeley, CA, United States of America

Francois Collin