Illumina Corporation

Edico Genome Corporation

Amnon Ptashek

Pieter Van Rooyen

Eric Jon Ojard

Michael D Ruehle

Mark Hahm

Rami Mehio

Gavin Stone

Varun Jain

Jacobus De Beer

Severine Catreux

Arun Visvanath

A system, method and apparatus for executing a bioinformatics analysis on genetic sequence data is provided. Particularly, a genomics analysis platform for executing a sequence analysis pipeline is provided. The genomics analysis platform includes one or more of a first integrated circuit, where each first integrated circuit forms a central processing unit (CPU) that is responsive to one or more software algorithms that are configured to instruct the CPU to perform a first set of genomic processing steps of the sequence analysis pipeline. Additionally, a second integrated circuit is also provided, where each second integrated circuit forming a field programmable gate array (FPGA), the FPGA being configured by firmware to arrange a set of hardwired digital logic circuits that are interconnected by a plurality of physical interconnects to perform a second set of genomic processing steps of the sequence analysis pipeline, the set of hardwired digital logic circuits of each FPGA being arranged as a set of processing engines to perform the second set of genomic processing steps. A shared memory is also provided.

Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing

Bioinformatics systems, apparatuses, and methods for generating a De Brujin graph

Bioinformatics systems, apparatuses, and methods for generating a De Bruijn graph

Growing community of inventors

San Diego, CA, United States of America

Amnon Ptashek