Institut Pasteur

Centre National De La Recherche Scientifique

Other

Genomic Vision

Institut Pasteur and Centre National De La Recherche Scientifique

Université´ D'aix-Marseille

Assistance Publique Des Hopitaux Marseille

Institut Pasteur Centre National De La Recherche Scientifique

Centre National De La Recherche Scientifique-cnrs

Assistance Publique Des Hopitaux De Marseille

Aaron Bensimon

David Bensimon

Francedillaois Heslot

Fran&ccedil;ois Heslot

Xavier Michalet

Vincent Croquette

Emmanuel Conseiller

Pierre Walrafen

Ronald Lebofsky

François Heslot

Nicolas Levy

Sylvain Berlemont

Jean-Christophe Olivo-Marin

Armand Berneman

Danielle Berneman

Arnaud Chiffaudel

John Herrick

Olivier Hyrien

Jean F Allemand

Terrence R Strick

Anne Vannier

Lucia Cinque

Kevin Cheeseman

Nicolas Lévy

The present invention relates to a method for analyzing in vitro D4Z4 tandem repeat arrays of nucleic acid contained on nucleic acid representative of chromosomes, in particular on nucleic acid representative of Human chromosomes 4 and 10, and to a kit therefore. Said method is in particular suitable for determining the number of D4Z4 repeat units in said D4Z4 repeat arrays. Said method is based on stretching of nucleic acid and in particular on Molecular Combing and relies on the use of probes, especially nucleic acid probes, with a particular design. The invention also relates to a method for providing tools for the diagnosis of facioscapulohumeral muscular dystrophy (FSHD) and to a diagnostic kit therefore. The invention further relates to a method for identifying biochemical events and/or genetic in regions containing such tandem repeat arrays.

Method for analyzing D4Z4 tandem repeat arrays of nucleic acid and kit therefore

The present invention relates to a method of detection of the presence of at least one domain of interest on a macromolecule to test, wherein said method comprises the following steps: a) determining beforehand at least two target regions on the domain of interest, designing and obtaining corresponding labeled probes of each target region, named set of probe of the domain of interest, the position of these probes one compared to the others being chosen and forming the specific signature of said domain of interest on the macromolecule to test; b) after spreading of the macromolecule to test on which the probes obtained in step a) are bound, detection of the position one compared to the others of the probes bound on the linearized macromolecule, the detection of the signature of a domain of interest indicating the presence of said domain of interest on the macromolecule to test, and conversely the absence of detection of signature or part of signature of a domain of interest indicating the absence of said domain or part of said domain of interest on the macromolecule to test.

Genomic morse code

A method of detecting a curvilinear object of a noisy image. The method includes filtering the noisy image in accordance with a two dimensional line profile. The line profile is selected within a class of steerable filters. A beamlet coefficient is calculated in accordance with the filtering, wherein a coefficient above a predetermined threshold identifies a local feature.

Feature adapted beamlet transform apparatus and associated methodology of detecting curvilinear objects of an image

The present invention relates to a method of detection of the presence of at least one domain of interest on a macromolecule to test, wherein said method comprises the following steps:

The subject of the present invention is a process for aligning a macromolecule (macromolecules) on the surface S of a support, characterized in that the triple line S/A/B (meniscus) resulting from the contact between a solvent A and the surface S and a medium B is caused to move on the said surface S, the said macromolecules having a part, especially an end, anchored on the surface S, the other part, especially the other end, being in solution in the solvent A. The subject of the present invention is also a process for detecting, measuring the intramolecular distance of, separating and/or assaying a macromolecule in a sample in which a process of alignment according to the invention is used.

Process for aligning macromolecules by passage of a meniscus and applications

The invention concerns a method for detecting or locating one or several genes of one or several specific A DNA sequence or one or several molecules reacting with DNA on a B DNA characterised in that it consists in: (a) fixing and combing a certain amount of said B DNA on a combing surface; (b) reacting the product of the B combing with one or several probes, linked with the gene(s) or specific A DNA sequences, or with the molecules capable of reacting with DNA; (c) extracting information corresponding to at least one of the following categories: (1) the position of the probes, (2) the distance between the probes, (3) the size of the probes (the total sum of sizes for quantifying the number of hybridised probes) for determining therefrom the presence, the location and/or the amount of genes or specific A DNA sequences. This method can be used in particular for the diagnosis of genetic diseases.

Method for the diagnosis of genetic diseases by molecular combing and diagnostic kit

A method for detecting or locating one or several genes of one or several specific A DNA sequence or one or several molecules reacting with DNA on a B DNA where the method can include: (a) fixing and combing a certain amount of the B DNA on a combing surface; (b) reacting the product of step (a) with one or several probes, linked with the gene(s) or specific A DNA sequences, or with the molecules capable of reacting with DNA; (c) extracting information corresponding to at least one of the following categories: (1) the position of the probes, (2) the distance between the probes, (3) the size of the probes (the total sum of sizes for quantifying the number of hybridized probes) and determining from this extracted information the presence, the location and/or the amount of a gene(s) or specific A DNA sequences. This method can be used in particular for the diagnosis of genetic diseases.

Physical mapping method using molecular combing technique allowing positioning of a great number of clones within a genome

A product includes a surface on which a coupled complex is aligned, adherent, and stationary, obtained by a process that includes providing a support having a surface with a molecule with biological activity attached, contacting the surface with a sample containing a macromolecule to couple the macromolecule to the molecule on the surface, passing a meniscus over the coupled complex to align the coupled complex, and detecting the macromolecule in the coupled complex. The product is alternatively obtained by passing a meniscus over the molecule with biological activity prior to contacting the surface with a sample containing a macromolecule to couple the macromolecule to the molecule on the surface.

Apparatus for the manipulating and testing of molecules and in particular of DNA comprising a surface on which the molecule is anchored on multiple points at one end and a paramagnetic bead on which said molecule is anchored on multiple points at its other end, magnetic means for applying a force to the bead, said magnetic means being used to control the stretching and rotation of said bead and molecule, optical magnification means and a camera for the visualisation of said bead, computer means to which the images of the camera are transmitted, said computer means comprising means for analyzing the motions of the bead. A method for the manipulating and testing of molecules and in particular of DNA in which a molecule is anchored at one end to a fixed surface and at its other end to a paramagnetic bead wherein said molecule is anchored on multiple points at each of said ends.

Apparatus and method for the manipulation and testing of molecules, and in particular of DNA

A device containing a personalizable substrate associated to a reader allowing the conditional operation of an electric or electronic appliance after comparison of the data with a memory by an identification and comparison circuit located on an essential part of said appliance and methods of using the device under conditional operation of electric or electronic appliances.

Personal or personalizable device for the conditional use of electric or electronic appliances, method of use

Molecular combing process for detecting macromolecules

Method for diagnosis of genetic diseases by molecular combing and diagnosis box

A process for aligning a macromolecule on the surface S of a support comprises forming a triple line S/A/B (meniscus) resulting from contact between a solvent A and the surface S and a medium B is caused to move on the surface S. The macromolecule has a part, especially an end, anchored on the surface S. The other part, especially the other end, is in solution in the solvent A. A process for detecting, measuring the intramolecular distance of, separating and/or assaying a macromolecule in a sample using the process of alignment is provided.

The invention relates to a process of attaching an end of a nucleic acid on a surface by providing a solution having a pH that allows for specific attachment of an end of a nucleic acid to a surface. The surface, the solution, and the nucleic acid are contacted to attach the end of the nucleic acid to the surface.

Processing for attaching an end of a nucleic acid to a surface by utilizing pH

A process for aligning a macromolecule (macromolecules) on the surface S of a support is characterized in that the triple line S/A/B (meniscus) resulting from the contact between a solvent A and the surface S and a medium B is caused to move on the said surface S, the said macromolecules having a part, especially an end, anchored on the surface S, the other part, especially the other end, being in solution in the solvent A. The subject of the present invention is also a process for detecting, measuring the intramolecular distance of, separating and/or assaying a macromolecule in a sample in which a process of alignment according to the invention is used.

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Antony, France

Aaron Bensimon